LICHENS

 

Human beings have an overwhelming compulsion to sort and name things. This helps us decide where we fit in the universe and where everything else fits as well. This process is called classification and currently the trend is to use this as a thread to follow evolutionary change and development. In order to determine where things fit in the grand scheme of things they must be very accurately described, then named, and this is called taxonomy.

 

The Flora of New Zealand course is where you will learn these skills and techniques to classify and identify plants.

 

This is a botany course and will show you how to look at plants with a view to describing them in a scientific manner. There is a lot of new terminology to learn and a list of terms and their definitions is added at the end.

 

When you collect specimens you will need to use a hand lens to discover other features to help identify them. A hand lens is an essential tool in plant identification and will become a constant companion.

 

The hand lens is held very close to your eye, about 1 - 3 cm away. In order to focus on the specimen you need to hold this really close to the lens as well, about 1 - 3 cm away.  You will look weird, but it won't show as everyone else will look weird as well.

 

Video clip of handlens

 

One of the first groups you will look at are what are considered to be 'primitive' plants. This includes lichens, liverworts and mosses. Here is the first problem! Often things that are happily accepted in normal usage are, in fact, incorrect in science. 

 

Lichens are not actually plants.  They are the result of a fungus and an alga (sometimes more than one alga) forming a symbiosis.

 

What is remarkable is that the 'lichen' that is formed is entirely different from either the fungus or the alga when these are free-living, and yet, it is an identifiable and classifiable organism in its own right. Lichens are described using terms for fungal taxonomy so there are many terms that are only used for them and not other plants.

 

Another remarkable thing about lichens, leafy liverworts and mosses is that they can dry out completely, then come back to life when re-wet. This is termed poikilohydric. When you think about higher plants this is impossible for them – pot plants wilt in a most alarming manner when not watered – so this is a significant attribute. The physiology that enables them to re-hydrate and continue to metabolise is the subject of a lot of scientific study.

 

The first step in identifying a lichen is to look at their basic shape and growth pattern – termed the morphology. It is likely that you have looked at lichens and never realised what they were. They are often those small greyish things that grow on tree trunks.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 


Plate 1. Lichens are everywhere. Examples here include a headstone and trees showing lichen on trunks and branches.

 

One of the most common species is found on fruit trees as well as other trees and looks like shall shrubs, about 20mm in height. This upright growth habit with a holdfast is described as fruticose. Sometimes lichens hang down (pendulous) but if they have a holdfast then they too are described as fruticose.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 


Figure 1. Simple diagram showing the thallus, apothecia and holdfast in an upright lichen and the holdfast of a  pendulous, fruticose lichen. Copyright S McCurdy, University of Waikato, 2003.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 


Plate 2. Fruticose lichen (Usnea sp.) showing holdfast

 

 

Other lichens may be a lot larger and look more like leaves. They have a distinct upper surface and a different lower surface (termed dorsi-ventral). These are termed foliose.

Photo of Pseudocyphellaria

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 


Plate 3. Different lichen morphology; foliose (leafy) on the left and crustose on the right.

 

Others that you will have noticed are flat and stuck firmly (closely appressed) to the substrate. Often these can't be removed without taking the substrate with them, and these are termed crustose.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 


Plate 4. Crustose lichen species ‘embedded’ in stone and tree bark.

 

 

Collect several specimens to look at and amongst these you need to have the one in the photo below, Ramalina celastri.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 


Plate 5. Commonly found lichen (Ramalina celastri).

 

 

Using the hand lens inspect the lichen. You will see that it is made up of small flattened pieces. This is termed the thallus and forms the main 'body' of the lichen.

 

There are also small bumps all over the thallus. These are reproductive structures, called apothecia (singular = apothecium) and reproductive spores are produced inside.

 

Figure 2. A lichen apothecium in cross-section view to show spores. Copyright S McCurdy, University of Waikato, 2003.

 

Cut the thallus across and have a look at the exposed end with the hand lens. You should see that the thallus has layers. There is a thin green layer on the outside and a white inner layer. These are the outer layers of green algae and the inner layer of fungal hyphae.

 

Where the thallus is divided into layers it is called heteromerous.

 

 

 

Figure 3. Diagrammatic cross-section of a heteromerous lichen showing distinct upper and lower tissue layers. Copyright S McCurdy, University of Waikato, 2003

 

 

Usually the partner that photosynthesises is outermost, nearer the light, and is called the photobiont. The fungal partner (mycobiont) does not photosynthesise and derives its nutrients from the photobiont. Thus it does not need to be near the light so is usually towards the middle of the thallus.

 

Some lichens do not have a thallus that is divided into layers - termed homoiomerous. They are generally dark, often black, in colour and are gelatinous.

 

 

 

Figure 4. Diagrammatic view of a cross-section of a homoiomerous lichen. Note that there are not separate upper and lower layers of tissue as in heteromerous lichens. Copyright S McCurdy, University of Waikato, 2003

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 


 

 

 

 

 

Plate 6. Lichen with a cyanobacterium as the photosynthetic partner (Leptogium sp.).

 

The colour is derived from the photobiont, which is a cyanobacterium rather than a green alga. The cyanobacteria are held in a matrix formed by the mycobiont that dries out to a thin and insignificant looking film but swells up when wet to 500 times its dry weight.

 

 

Identification

 

We are lucky to have some superb books on identification of plants. These often use what is called a dichotomous key. This is like a series of ‘clues’. The term dichotomous means divided into two and in this context it means that each ‘clue’ is a question with only two possible answers. An example is ‘has hairy stems’ or ‘does not have hairy stems’. Your answer determines which step is next. Gradually as you determine the attributes of your specimen against the key, you reach a final identification.

 

The Flora of New Zealand Volume 4 is the lichen key. This is now a little out of date but an updated publication is available and this is called Lichens of New Zealand, by Malcolm and Galloway (1997). Most of what you will look at in these laboratory exercises will be covered by the Flora.

 

There is a comprehensive glossary at the back of each volume and you will need to refer to this all the time, so put a bookmark in there now to save yourself some time later. The newer book also has a wonderful glossary together with drawings of the actual feature so it is often easier to figure out what they mean. There are also some lovely pictures that can be an invaluable help.

 

The first lichen we will look at will be the most commonly found and widespread species, Ramalina. This is the one pictured in Plate 4. You may never have noticed it before but look at your local trees, particularly fruit trees and old fence posts.

 

One of the first steps in identifying lichen is to determine their gross morphology, i.e. what shape are they?  They can be fruticose, foliose, crustose or squamulose. This is where the key begins.

 

 

Using New Zealand Flora Volume 4 (lichens of New Zealand) start at page xlvi.

 

 

 

Your next step is to go to page 496 and read the genus description. Take special note of where it is most commonly found – this is always a valuable clue.

 

The second very common lichen we will look at is called Usnea. This is often called ‘old man’s beard’ as generally they festoon trees giving them a bearded appearance. There is one species in this genera can grow to extraordinary lengths  - up to several metres long! These species are also used extensively in natural dying providing many beautiful colours.

 

You have seen from the first foray into the key that the first step is to determine the overall shape (morphology) of the lichen. In this case you can see that it has a holdfast and looks like an upside-down tree. Therefore it is fruticose. Go directly to 234. (Do not pass GO and do not collect $200).

 

 

 

 

 

 

Now go to page 596 in the Flora and check that the description of the genus fits your specimen.

 

The next specimen we’ll try and identify is commonly found in fairly humid areas of bush, particularly manuka/kanuka forests. The first step is always to determine the morphology – does it have a holdfast? – does it have a distinct top and bottom surface? – what colour is it dry and wet? – what other distinguishing features are there? – ripples; apothecia; grainy areas, holes?

 

Often, particularly in large foliose species, there are small ‘hollows’ on the dorsal side. You need to look at these carefully, firstly with your hand lens and then under a dissecting microscope. There are two types of hollow. The first one has a distinct rim and the base of the hollow is smooth. This is caused by the fungal hyphae lying in a transverse fashion. These are called cyphellae and the genus that has cyphellae is called Sticta.

 

Photo cyphellae and pseudo

 

The second type of ‘hole’ looks a little different. There is no rim and the base is slightly roughened. This comes about because the fungal hyphae are ‘end on’ rather than lying flat. These are called pseudocyphellae (false cyphellae). The genus most renowned for the presence of pseudocyphellae is called Pseudocyphellaria.  New Zealand has the greatest diversity of Pseudocyphellaria and they make up a large and important component in our lichen flora. Often you can look in overseas lichen texts and there are no Pseudocyphellaria at all, or sometimes just a few.

 

As you have discovered already the Flora is divided into sections based on the morphology of the lichen. Your specimen is dorsi-ventral, has no holdfast, is somewhat leaf-like, green when wet and, if you look carefully on the back with your handlens you can see if it has pseudocyphellae or cyphellae. Begin at 162, page lxii..

 

 

 

 

 

 

 

 

References

 

Galloway, D.H. 1985: Flora of New Zealand, Volume 4, Government Printer, Wellington

Malcolm, W.M., and Galloway, D.J. 1997: New Zealand Lichens Checklist, key and Glossary, Museum of New Zealand Te Papa Tongarewa, Wellington.


 

Terminology that you need to be familiar with

 

Cephalodium (plural cephalodia) - these structures contain cyanobacteria and occur in lichens where the main photobiont is a green alga

 

Chondroidal – is a strong and stretchy distinct cord in the middle of a lichen ‘stem’ – a bit like the elastic in a bungy cord.

 

Chlorophyte - a green alga

 

Concolorous – the same color, usually referring to both sides or both the top and bottom.

 

Cortex - the dense, outermost layer of most lichen thalli.

 

Corticolous – growing on trees. Relates to the ‘cortex’ or bark of a tree.

 

Crustose - crust-like thallus that lacks a lower cortex and rhizines and is firmly attached to the substrate.

 

Cyanobacterium (plural cyanobacteria) - a group of photosynthetic bacteria formerly called blue-green algae. Cyanobacterial partners in lichens usually colour them black , grey or dark brown and are usually nitrogen fixers. If the cyanobacteria are not the main photobiont then they are housed in specialised structures called cephalodia.

 

Dimorphic – having two ‘bodies’, two different looking thalli. In the case of several genera in the fruticose lichens they have small platelet-like parts of their thallus as well as tall upright parts of their thallus.

 

Dorsi-ventral - having distinctly different upper and lower surfaces.

 

Foliose - leaf-like with an upper and lower cortex.

 

Fruticose - shaped like an erect or hanging shrub. 'Stems' are usually rounded and often have a distinct holdfast at the base.

 

Heteromerous - a thallus where the photobiont and the mycobiont form separate layers.

 

Holdfast - part of a thallus adapted for attachment. Usually a point where growth arises, similar to a holdfast in some seaweeds eg. kelp.

 

Homoiomerous - a thallus structure where the photobiont and mycobiont are intermixed rather than forming separate layers.

 

Hyphae - fungal filaments

 

Mazaedium – a reproductive structure that has the appearance of a spot of grains or granules. Often these are on the underside of the thallus and are most commonly black in colour. (Compare this to the regular and ‘contained’ shape of an apothecium).

 

Mycobiont - the fungal partner of a lichen.

 

Photobiont - the photosynthetic symbiont of a lichen. This may be a green algae or a cyanbacterium, and some lichens contain both types.

 

Rhizines - root-like structures adapted for attaching a thallus to its substrate.

 

Saxicolous – growing on rocks

 

Squamulose - with small scales or squamules.

 

Terricolous – growing in the earth or soil

 

Thallus - the vegetative (non-reproductive) body of a lichen.